Strain |
Pseudomonas aeruginosa RP73
GCF_000414035.1|latest |
Locus Tag |
M062_11085
|
Name |
ligD
|
Replicon | chromosome |
Genomic location | 2369617 - 2372139 (+ strand) |
RefSeq | YP_008132651.1 |
GI | 514412984 |
EC Number | 6.5.1.1 |
Entrez | 15959958 |
NCBI Locus Tag | M062_11085 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
ATP-dependent DNA ligase
|
Synonyms | |
Evidence for Translation | |
Charge (pH 7) | 18.97 |
Kyte-Doolittle Hydrophobicity Value | -0.533 |
Molecular Weight (kDa) | 94.0 |
Isoelectric Point (pI) | 9.72 |
Individual Mappings | |
Additional evidence for subcellular localization |
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
2FAQ | HYDROLASE/TRANSFERASE | 12/07/05 | Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain with ATP and Manganese | Pseudomonas aeruginosa | 1.9 | X-RAY DIFFRACTION | 99.7 |
3N9B | LIGASE | 05/28/10 | Crystal Structure of the P. aeruginosa LigD phosphoesterase domain | Pseudomonas aeruginosa | 1.92 | X-RAY DIFFRACTION | 99.4 |
3N9D | LIGASE | 05/28/10 | Monoclinic Structure of P. aeruginosa LigD phosphoesterase domain | Pseudomonas aeruginosa | 2.3 | X-RAY DIFFRACTION | 99.4 |
2FAO | HYDROLASE/TRANSFERASE | 12/07/05 | Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain | Pseudomonas aeruginosa | 1.5 | X-RAY DIFFRACTION | 99.7 |
2FAR | Hydrolase/Transferase | 12/07/05 | Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain with dATP and Manganese | Pseudomonas aeruginosa | 1.9 | X-RAY DIFFRACTION | 99.7 |
2LJ6 | DNA BINDING PROTEIN | 09/06/11 | Solution Structure and DNA-binding Properties of the Phosphoesterase Domain of DNA Ligase D | Pseudomonas aeruginosa | NOT | SOLUTION NMR | 99.4 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 288 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG003336 (490 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: M062_11085
Search term: ligD
Search term: ATP-dependent DNA ligase
|