Strain |
Pseudomonas aeruginosa RP73
GCF_000414035.1|latest |
Locus Tag |
M062_26110
|
Name |
|
Replicon | chromosome |
Genomic location | 5627085 - 5627627 (- strand) |
RefSeq | YP_008135600.1 |
GI | 514412076 |
Entrez | 15962959 |
NCBI Locus Tag | M062_26110 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
oligoribonuclease
|
Synonyms | |
Evidence for Translation | |
Charge (pH 7) | -5.38 |
Kyte-Doolittle Hydrophobicity Value | -0.494 |
Molecular Weight (kDa) | 20.8 |
Isoelectric Point (pI) | 5.57 |
Individual Mappings | |
Additional evidence for subcellular localization |
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
7V9Z | HYDROLASE | 08/27/21 | PaOrn Oligoribonuclease native structure | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) | 1.85 | X-RAY DIFFRACTION | 100.0 |
7VA3 | HYDROLASE | 08/27/21 | PaOrn Oligoribonuclease D11A mutant with substrate pGpG complex structure | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SYNTHETIC CONSTRUCT | 1.8 | X-RAY DIFFRACTION | 99.4 |
7VA6 | HYDROLASE | 08/27/21 | PaOrn Oligoribonuclease D11A mutant with RNA GU complex structure | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SYNTHETIC CONSTRUCT | 2.1 | X-RAY DIFFRACTION | 99.4 |
7VA2 | HYDROLASE | 08/27/21 | PaOrn Oligoribonuclease D11A mutant with product GMP complex structure | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) | 2.3 | X-RAY DIFFRACTION | 99.4 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 216 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG004566 (536 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: M062_26110
Search term: oligoribonuclease
|
Ensembl
110, assembly
GRCh38.p14
|
RNA exonuclease 2 [Source:HGNC Symbol;Acc:HGNC:17851]
E-value:
3.9e-47
Percent Identity:
50.6
|