Pseudomonas entomophila L48, PSEEN2205 (cspD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas entomophila L48
GCF_000026105.1|latest
Locus Tag
PSEEN2205
Name
cspD
Replicon chromosome
Genomic location 2318562 - 2318825 (- strand)

Cross-References

RefSeq YP_607829.1
GI 104781331
Entrez 4085483
INSDC CAK15025.1
UniParc UPI0000D78658
UniProtKB Acc Q1IBE0
UniProtKB ID Q1IBE0_PSEE4
UniRef100 UniRef100_Q1IBE0
UniRef50 UniRef50_P0A970
UniRef90 UniRef90_Q1IBE0

Product

Feature Type CDS
Coding Frame 1
Product Name
cold-shock protein CspD
Synonyms
Evidence for Translation
Charge (pH 7) 0.46
Kyte-Doolittle Hydrophobicity Value -0.444
Molecular Weight (kDa) 9170.1
Isoelectric Point (pI) 7.68

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 502 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002930 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSEEN2205
Search term: cspD

Human Homologs

Ensembl 110, assembly GRCh38.p14
lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986]
E-value: 1.4e-05
Percent Identity: 31.9
Ensembl 110, assembly GRCh38.p14
lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986]
E-value: 1.4e-05
Percent Identity: 31.9

References

No references are associated with this feature.