Pseudomonas stutzeri A1501, PST_1223 (algU)

Gene Feature Overview

Strain	Pseudomonas stutzeri A1501 GCF_000013785.1|latest
Locus Tag	PST_1223
Name	algU
Replicon	chromosome
Genomic location	1331314 - 1331895 (+ strand)

Cross-References

RefSeq	YP_001171760.1
GI	146281607
Entrez	5097309
INSDC	ABP78918.1
NCBI Locus Tag	PST_1223
UniParc	UPI00014FF2CF
UniProtKB Acc	A4VIW7
UniProtKB ID	A4VIW7_PSEU5
UniRef100	UniRef100_A0A023WV94
UniRef50	UniRef50_D0ZSY9
UniRef90	UniRef90_Q06198

Product

Feature Type	CDS
Coding Frame	1
Product Name	RNA polymerase sigma factor AlgU
Synonyms
Evidence for Translation
Charge (pH 7)	-5.35
Kyte-Doolittle Hydrophobicity Value	-0.479
Molecular Weight (kDa)	22.3
Isoelectric Point (pI)	5.61

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
6IN7	TRANSCRIPTION	10/24/18	Crystal structure of AlgU in complex with MucA(cyto)	Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)	1.96	X-RAY DIFFRACTION	91.7

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 492 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000736 (532 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PST_1223 Search term: algU Search term: RNA polymerase sigma factor AlgU

Human Homologs

References