Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_0686 (rplR)

Gene Feature Overview

Strain	Pseudomonas stutzeri ATCC 17588 = LMG 11199 - Assembly GCF_000219605.1 GCF_000219605.1|latest
Locus Tag	PSTAB_0686
Name	rplR
Replicon	chromosome
Genomic location	753202 - 753552 (+ strand)

Cross-References

RefSeq	YP_004713056.1
GI	339492763
Entrez	10941729
INSDC	AEJ03967.1
NCBI Locus Tag	PSTAB_0686
UniParc	UPI0001ECFBF7
UniProtKB Acc	F8H9V2
UniProtKB ID	F8H9V2_PSEUT
UniRef100	UniRef100_E2RY30
UniRef50	UniRef50_Q9RSL2
UniRef90	UniRef90_C1DKM9

Product

Feature Type	CDS
Coding Frame	1
Product Name	50S ribosomal protein L18
Synonyms
Evidence for Translation
Charge (pH 7)	11.68
Kyte-Doolittle Hydrophobicity Value	-0.410
Molecular Weight (kDa)	12.6
Isoelectric Point (pI)	11.01

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
6SPB	RIBOSOME	09/01/19	Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6	Pseudomonas aeruginosa	2.82	ELECTRON MICROSCOPY	93.9
7UNW	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.6	ELECTRON MICROSCOPY	94.0
7UNV	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.7	ELECTRON MICROSCOPY	94.0
6SPD	RIBOSOME	09/01/19	Pseudomonas aeruginosa 50s ribosome from a clinical isolate	Pseudomonas aeruginosa	3.28	ELECTRON MICROSCOPY	93.9
7UNU	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.9	ELECTRON MICROSCOPY	94.0
7UNR	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.9	ELECTRON MICROSCOPY	94.0
6SPF	RIBOSOME	09/01/19	Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate	Pseudomonas aeruginosa	2.89	ELECTRON MICROSCOPY	93.9
6SPG	RIBOSOME	09/01/19	Pseudomonas aeruginosa 70s ribosome from a clinical isolate	Pseudomonas aeruginosa	3.34	ELECTRON MICROSCOPY	93.9

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 590 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001463 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSTAB_0686 Search term: rplR Search term: 50S ribosomal protein L18

Human Homologs

References