Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_2018 (ligD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas stutzeri ATCC 17588 = LMG 11199 - Assembly GCF_000219605.1
GCF_000219605.1|latest
Locus Tag
PSTAB_2018
Name
ligD
Replicon chromosome
Genomic location 2140831 - 2143386 (- strand)

Cross-References

RefSeq YP_004714388.1
GI 339494095
Entrez 10943061
INSDC AEJ05299.1
NCBI Locus Tag PSTAB_2018
UniParc UPI000215DD9C
UniProtKB Acc F8HAP9
UniProtKB ID F8HAP9_PSEUT
UniRef100 UniRef100_F8HAP9
UniRef50 UniRef50_Q9I1X7
UniRef90 UniRef90_S6JQ42

Product

Feature Type CDS
Coding Frame 1
Product Name
ATP-dependent DNA ligase
Synonyms
Evidence for Translation
Charge (pH 7) 15.47
Kyte-Doolittle Hydrophobicity Value -0.462
Molecular Weight (kDa) 94542.9
Isoelectric Point (pI) 9.43

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 280 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003336 (490 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSTAB_2018
Search term: ligD

Human Homologs

References

No references are associated with this feature.