Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_2184 (cspD)

Gene Feature Overview

Strain	Pseudomonas stutzeri ATCC 17588 = LMG 11199 - Assembly GCF_000219605.1 GCF_000219605.1|latest
Locus Tag	PSTAB_2184
Name	cspD
Replicon	chromosome
Genomic location	2341169 - 2341432 (+ strand)

Cross-References

RefSeq	YP_004714554.1
GI	339494261
Entrez	10943227
INSDC	AEJ05465.1
NCBI Locus Tag	PSTAB_2184
UniParc	UPI00020471EC
UniProtKB Acc	F8H013
UniProtKB ID	F8H013_PSEUT
UniRef100	UniRef100_A4VLV8
UniRef50	UniRef50_P0A970
UniRef90	UniRef90_A4VLV8

Product

Feature Type	CDS
Coding Frame	1
Product Name	cold-shock protein CspD
Synonyms
Evidence for Translation
Charge (pH 7)	-0.54
Kyte-Doolittle Hydrophobicity Value	-0.168
Molecular Weight (kDa)	9.2
Isoelectric Point (pI)	6.51

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 497 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002930 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSTAB_2184 Search term: cspD Search term: cold-shock protein CspD

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000363314 lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986] E-value: 9.4e-07 Percent Identity: 40.9
Ensembl 110, assembly GRCh38.p14	ENSP00000254231 lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986] E-value: 9.4e-07 Percent Identity: 40.9

References