Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_2664 (srmB)

Gene Feature Overview

Strain	Pseudomonas stutzeri ATCC 17588 = LMG 11199 - Assembly GCF_000219605.1 GCF_000219605.1|latest
Locus Tag	PSTAB_2664
Name	srmB
Replicon	chromosome
Genomic location	2862351 - 2863682 (- strand)

Cross-References

RefSeq	YP_004715034.1
GI	339494741
Entrez	10943707
INSDC	AEJ05945.1
NCBI Locus Tag	PSTAB_2664
UniParc	UPI000215DEDC
UniProtKB Acc	F8H4N6
UniProtKB ID	F8H4N6_PSEUT
UniRef100	UniRef100_F8H4N6
UniRef50	UniRef50_A0A098FQD5
UniRef90	UniRef90_A4VMY1

Product

Feature Type	CDS
Coding Frame	1
Product Name	ATP-dependent RNA helicase SrmB
Synonyms
Evidence for Translation
Charge (pH 7)	20.12
Kyte-Doolittle Hydrophobicity Value	-0.307
Molecular Weight (kDa)	48990.6
Isoelectric Point (pI)	10.40

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 645 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002174 (538 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSTAB_2664 Search term: srmB Search term: ATP-dependent RNA helicase SrmB

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000482680 DEAD-box helicase 27 [Source:HGNC Symbol;Acc:HGNC:15837] E-value: 7.3e-63 Percent Identity: 38.3

References