Pseudomonas stutzeri ATCC 17588 = LMG 11199, PSTAB_3865 (dbpA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas stutzeri ATCC 17588 = LMG 11199 - Assembly GCF_000219605.1
GCF_000219605.1|latest
Locus Tag
PSTAB_3865
Name
dbpA
Replicon chromosome
Genomic location 4172309 - 4173847 (+ strand)

Cross-References

RefSeq YP_004716235.1
GI 339495942
Entrez 10944908
INSDC AEJ07146.1
NCBI Locus Tag PSTAB_3865
UniParc UPI000215D5C7
UniProtKB Acc F8H411
UniProtKB ID F8H411_PSEUT
UniRef100 UniRef100_F8H411
UniRef50 UniRef50_P21693
UniRef90 UniRef90_L0GHR7

Product

Feature Type CDS
Coding Frame 1
Product Name
ATP-dependent RNA helicase DbpA
Synonyms
Evidence for Translation
Charge (pH 7) 11.66
Kyte-Doolittle Hydrophobicity Value -0.132
Molecular Weight (kDa) 55568.3
Isoelectric Point (pI) 9.25

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 619 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000446 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSTAB_3865
Search term: dbpA

Human Homologs

Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 3.7e-58
Percent Identity: 38.3
Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 3.7e-58
Percent Identity: 38.3
Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 3.7e-58
Percent Identity: 38.3
Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 3.7e-58
Percent Identity: 38.3

References

No references are associated with this feature.