Pseudomonas stutzeri DSM 4166, PSTAA_2328 (cspD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas stutzeri DSM 4166
GCF_000195105.1|latest
Locus Tag
PSTAA_2328
Name
cspD
Replicon chromosome
Genomic location 2502273 - 2502536 (+ strand)

Cross-References

RefSeq YP_005938958.1
GI 386020934
Entrez 12529471
INSDC AEA84216.1
NCBI Locus Tag PSTAA_2328
UniParc UPI00020471EC
UniProtKB Acc F2N5S2
UniProtKB ID F2N5S2_PSEU6
UniRef100 UniRef100_A4VLV8
UniRef50 UniRef50_P0A970
UniRef90 UniRef90_A4VLV8

Product

Feature Type CDS
Coding Frame 1
Product Name
cold-shock protein CspD
Synonyms
Evidence for Translation
Charge (pH 7) -0.54
Kyte-Doolittle Hydrophobicity Value -0.168
Molecular Weight (kDa) 9.2
Isoelectric Point (pI) 6.51

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 497 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002930 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSTAA_2328
Search term: cspD

Human Homologs

Ensembl 110, assembly GRCh38.p14
lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986]
E-value: 9.4e-07
Percent Identity: 40.9
Ensembl 110, assembly GRCh38.p14
lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986]
E-value: 9.4e-07
Percent Identity: 40.9

References

No references are associated with this feature.