Pseudomonas stutzeri DSM 4166, PSTAA_3876 (orn)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas stutzeri DSM 4166
GCF_000195105.1|latest
Locus Tag
PSTAA_3876
Name
orn
Replicon chromosome
Genomic location 4142747 - 4143289 (- strand)

Cross-References

RefSeq YP_005940474.1
GI 386022449
Entrez 12531027
INSDC AEA85732.1
NCBI Locus Tag PSTAA_3876
UniParc UPI00014FE994
UniProtKB Acc F2N358
UniProtKB ID F2N358_PSEU6
UniRef100 UniRef100_A4VR15
UniRef50 UniRef50_P45340
UniRef90 UniRef90_A4VR15

Product

Feature Type CDS
Coding Frame 1
Product Name
oligoribonuclease
Synonyms
Evidence for Translation
Charge (pH 7) -5.62
Kyte-Doolittle Hydrophobicity Value -0.427
Molecular Weight (kDa) 20.7
Isoelectric Point (pI) 5.30

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 216 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004566 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSTAA_3876
Search term: orn
Search term: oligoribonuclease

Human Homologs

Ensembl 110, assembly GRCh38.p14
RNA exonuclease 2 [Source:HGNC Symbol;Acc:HGNC:17851]
E-value: 1.8e-44
Percent Identity: 49.4

References

No references are associated with this feature.