Pseudomonas stutzeri CCUG 29243, A458_18085 (rplD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas stutzeri CCUG 29243
GCF_000267545.1|latest
Locus Tag
A458_18085
Name
rplD
Replicon chromosome
Genomic location 3880339 - 3880941 (- strand)

Cross-References

RefSeq YP_006459265.1
GI 392422661
Entrez 13146180
INSDC AFM34842.1
NCBI Locus Tag A458_18085
UniParc UPI000266030D
UniProtKB Acc I4CXN5
UniProtKB ID I4CXN5_PSEST
UniRef100 UniRef100_I4CXN5
UniRef50 UniRef50_P49226
UniRef90 UniRef90_C1DKL4

Product

Feature Type CDS
Coding Frame 1
Product Name
50S ribosomal protein L4
Synonyms
Evidence for Translation
Charge (pH 7) 9.71
Kyte-Doolittle Hydrophobicity Value -0.299
Molecular Weight (kDa) 21.7
Isoelectric Point (pI) 10.57

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 591 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001448 (528 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: A458_18085
Search term: rplD

Human Homologs

Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276]
E-value: 1.1e-10
Percent Identity: 26.8
Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276]
E-value: 1.1e-10
Percent Identity: 26.8
Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276]
E-value: 1.1e-10
Percent Identity: 26.8

References

No references are associated with this feature.