Pseudomonas stutzeri DSM 10701, PSJM300_06280

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas stutzeri DSM 10701
GCF_000279165.1|latest
Locus Tag
PSJM300_06280
Name
Replicon chromosome
Genomic location 1355637 - 1355822 (+ strand)

Cross-References

RefSeq YP_006523688.1
GI 397686369
Entrez 13325730
INSDC AFN77330.1
NCBI Locus Tag PSJM300_06280
UniParc UPI0000389325
UniProtKB Acc I6ZDJ3
UniProtKB ID I6ZDJ3_PSEST
UniRef100 UniRef100_A4VJB5
UniRef50 UniRef50_Q5E7G3
UniRef90 UniRef90_A4VJB5

Product

Feature Type CDS
Coding Frame 1
Product Name
carbon storage regulator
Synonyms
Evidence for Translation
Charge (pH 7) 0.46
Kyte-Doolittle Hydrophobicity Value -0.402
Molecular Weight (kDa) 6.9
Isoelectric Point (pI) 7.70

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AMR gene predictions from CARD database

Identified using the Resistance Gene Identifier (RGI)

Model Name Definition Accession Model Type (?) SNP Cutoff Bit Score Percent Identity CARD Version
rsmA rsmA is a gene that regulates virulence of Pseudomonas aeruginosa. However, its negative effect on MexEF-OprN overexpression has been noted to confer resistance to various antibiotics. It's Escherichia coli homolog is csrA. [PMID:16622241, PMID:11673439] ARO:3005069 protein homolog model Strict 115.5 98.36 3.2.5

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
7YR6 RNA BINDING PROTEIN/RNA 08/09/22 Cryo-EM structure of Pseudomonas aeruginosa RsmZ RNA in complex with two RsmA protein dimers Pseudomonas aeruginosa 4.8 ELECTRON MICROSCOPY 100.0
1VPZ RNA BINDING PROTEIN 11/24/04 Crystal structure of a putative carbon storage regulator protein (csra, pa0905) from pseudomonas aeruginosa at 2.05 A resolution Pseudomonas aeruginosa 2.05 X-RAY DIFFRACTION 98.1
7YR7 RNA BINDING PROTEIN/RNA 08/09/22 Cryo-EM structure of Pseudomonas aeruginosa RsmZ RNA in complex with three RsmA protein dimers Pseudomonas aeruginosa 3.8 ELECTRON MICROSCOPY 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 227 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000872 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSJM300_06280

Human Homologs

References

No references are associated with this feature.