Pseudomonas stutzeri DSM 10701, PSJM300_11875

Gene Feature Overview

Strain	Pseudomonas stutzeri DSM 10701 GCF_000279165.1|latest
Locus Tag	PSJM300_11875
Name
Replicon	chromosome
Genomic location	2605793 - 2606053 (+ strand)

Cross-References

RefSeq	YP_006524797.1
GI	397687478
Entrez	13327135
INSDC	AFN78439.1
NCBI Locus Tag	PSJM300_11875
UniParc	UPI00026D706D
UniProtKB Acc	I7A1R2
UniProtKB ID	I7A1R2_PSEST
UniRef100	UniRef100_I7A1R2
UniRef50	UniRef50_P0A970
UniRef90	UniRef90_I7A1R2

Product

Feature Type	CDS
Coding Frame	1
Product Name	cold-shock protein CspD
Synonyms
Evidence for Translation
Charge (pH 7)	-0.54
Kyte-Doolittle Hydrophobicity Value	-0.016
Molecular Weight (kDa)	9086.3
Isoelectric Point (pI)	6.51

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 500 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002930 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSJM300_11875 Search term: cold-shock protein CspD

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000363314 lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986] E-value: 1.2e-06 Percent Identity: 37.7
Ensembl 110, assembly GRCh38.p14	ENSP00000254231 lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986] E-value: 1.2e-06 Percent Identity: 37.7

References