Pseudomonas stutzeri DSM 10701, PSJM300_16920 (rplD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas stutzeri DSM 10701
GCF_000279165.1|latest
Locus Tag
PSJM300_16920
Name
rplD
Replicon chromosome
Genomic location 3670777 - 3671379 (- strand)

Cross-References

RefSeq YP_006525799.1
GI 397688480
Entrez 13325981
NCBI Locus Tag PSJM300_16920

Product

Feature Type CDS
Coding Frame 1
Product Name
50S ribosomal protein L4
Synonyms
Evidence for Translation
Charge (pH 7) 9.71
Kyte-Doolittle Hydrophobicity Value -0.299
Molecular Weight (kDa) 21751.8
Isoelectric Point (pI) 10.57

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 591 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001448 (528 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSJM300_16920
Search term: rplD

Human Homologs

Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276]
E-value: 2.2e-11
Percent Identity: 29.1
Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276]
E-value: 2.2e-11
Percent Identity: 29.1
Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:14276]
E-value: 2.2e-11
Percent Identity: 29.1

References

No references are associated with this feature.