Pseudomonas stutzeri DSM 10701, PSJM300_16925 (rplC)

Gene Feature Overview

Strain	Pseudomonas stutzeri DSM 10701 GCF_000279165.1|latest
Locus Tag	PSJM300_16925
Name	rplC
Replicon	chromosome
Genomic location	3671392 - 3672027 (- strand)

Cross-References

RefSeq	YP_006525800.1
GI	397688481
Entrez	13325982
INSDC	AFN79442.1
NCBI Locus Tag	PSJM300_16925
UniParc	UPI00026D6982
UniProtKB Acc	I6Z8D2
UniProtKB ID	I6Z8D2_PSEST
UniRef100	UniRef100_I6Z8D2
UniRef50	UniRef50_A2SLF7
UniRef90	UniRef90_Q889X1

Product

Feature Type	CDS
Coding Frame	1
Product Name	50S ribosomal protein L3
Synonyms
Evidence for Translation
Charge (pH 7)	9.90
Kyte-Doolittle Hydrophobicity Value	-0.371
Molecular Weight (kDa)	22732.8
Isoelectric Point (pI)	10.65

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
7UNU	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.9	ELECTRON MICROSCOPY	90.5
6SPD	RIBOSOME	09/01/19	Pseudomonas aeruginosa 50s ribosome from a clinical isolate	Pseudomonas aeruginosa	3.28	ELECTRON MICROSCOPY	90.3
6SPB	RIBOSOME	09/01/19	Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6	Pseudomonas aeruginosa	2.82	ELECTRON MICROSCOPY	90.3
7UNR	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.9	ELECTRON MICROSCOPY	90.5
7UNV	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.7	ELECTRON MICROSCOPY	90.5
7UNW	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.6	ELECTRON MICROSCOPY	90.5
6SPG	RIBOSOME	09/01/19	Pseudomonas aeruginosa 70s ribosome from a clinical isolate	Pseudomonas aeruginosa	3.34	ELECTRON MICROSCOPY	90.3
6SPF	RIBOSOME	09/01/19	Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate	Pseudomonas aeruginosa	2.89	ELECTRON MICROSCOPY	90.3

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 628 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001447 (534 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSJM300_16925 Search term: rplC Search term: 50S ribosomal protein L3

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000264995 mitochondrial ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10379] E-value: 9.3e-24 Percent Identity: 32.1
Ensembl 110, assembly GRCh38.p14	ENSP00000398536 mitochondrial ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10379] E-value: 9.3e-24 Percent Identity: 32.1
Ensembl 110, assembly GRCh38.p14	ENSP00000424107 mitochondrial ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10379] E-value: 9.3e-24 Percent Identity: 32.1

References