Pseudomonas mendocina NK-01, MDS_0514

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_0514
Name
Replicon chromosome
Genomic location 550952 - 552328 (- strand)

Cross-References

RefSeq YP_004378297.1
GI 330501428
Entrez 10455296
INSDC AEB56545.1
NCBI Locus Tag MDS_0514
UniParc UPI000206E91E
UniProtKB Acc F4DLL5
UniProtKB ID F4DLL5_PSEMN
UniRef100 UniRef100_F4DLL5
UniRef50 UniRef50_P21693
UniRef90 UniRef90_A4XPI3

Product

Feature Type CDS
Coding Frame 1
Product Name
ATP-dependent RNA helicase DbpA
Synonyms
Evidence for Translation
Charge (pH 7) 6.24
Kyte-Doolittle Hydrophobicity Value -0.009
Molecular Weight (kDa) 49404.7
Isoelectric Point (pI) 8.59

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown (This protein may have multiple localization sites) Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 626 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000446 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_0514

Human Homologs

Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 1.1e-58
Percent Identity: 38.2
Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 1.1e-58
Percent Identity: 38.2
Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 1.1e-58
Percent Identity: 38.2
Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 1.1e-58
Percent Identity: 38.2

References

No references are associated with this feature.