Strain |
Pseudomonas mendocina NK-01
GCF_000204295.1|latest |
Locus Tag |
MDS_0709
|
Name |
|
Replicon | chromosome |
Genomic location | 770520 - 770780 (+ strand) |
RefSeq | YP_004378492.1 |
GI | 330501623 |
Entrez | 10455491 |
INSDC | AEB56740.1 |
NCBI Locus Tag | MDS_0709 |
UniParc | UPI000206EAA8 |
UniProtKB Acc | F4DNI0 |
UniProtKB ID | F4DNI0_PSEMN |
UniRef100 | UniRef100_F4DNI0 |
UniRef50 | UniRef50_Q0C0N8 |
UniRef90 | UniRef90_A4XPY7 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
RNA-binding protein Hfq
|
Synonyms | |
Evidence for Translation | |
Charge (pH 7) | 1.46 |
Kyte-Doolittle Hydrophobicity Value | -0.288 |
Molecular Weight (kDa) | 9.5 |
Isoelectric Point (pI) | 8.99 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
3QUI | RNA BINDING PROTEIN | 02/24/11 | Crystal structure of Pseudomonas aeruginosa Hfq in complex with ADPNP | Pseudomonas aeruginosa | 1.933 | X-RAY DIFFRACTION | 91.9 |
8BVH | RNA BINDING PROTEIN | 12/03/22 | Cryo-EM structure of the Hfq-Crc-amiE translation repression assembly. | Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT | 3.6 | ELECTRON MICROSCOPY | 91.9 |
4J5Y | RNA BINDING PROTEIN | 02/11/13 | Crystal structure of Hfq from Pseudomonas aeruginosa in complex with ATP | Pseudomonas aeruginosa | 2.0953 | X-RAY DIFFRACTION | 91.9 |
8BVJ | RNA BINDING PROTEIN | 12/04/22 | Hfq-Crc-estA translation repression complex | Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT | 4.5 | ELECTRON MICROSCOPY | 91.9 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 282 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG004559 (536 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: MDS_0709
Search term: RNA-binding protein Hfq
|