Pseudomonas mendocina NK-01, MDS_0927

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_0927
Name
Replicon chromosome
Genomic location 1030695 - 1031783 (- strand)

Cross-References

RefSeq YP_004378710.1
GI 330501841
Entrez 10455709
INSDC AEB56958.1
NCBI Locus Tag MDS_0927
UniParc UPI000206E6FA
UniProtKB Acc F4DR56
UniProtKB ID F4DR56_PSEMN
UniRef100 UniRef100_F4DR56
UniRef50 UniRef50_A7ML95
UniRef90 UniRef90_A4XQI3

Product

Feature Type CDS
Coding Frame 1
Product Name
tRNA (uracil-5-)-methyltransferase
Synonyms
Evidence for Translation
Charge (pH 7) -6.18
Kyte-Doolittle Hydrophobicity Value -0.305
Molecular Weight (kDa) 40931.0
Isoelectric Point (pI) 5.70

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 501 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004366 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_0927

Human Homologs

References

No references are associated with this feature.