Pseudomonas mendocina NK-01, MDS_1005

Gene Feature Overview

Strain	Pseudomonas mendocina NK-01 GCF_000204295.1|latest
Locus Tag	MDS_1005
Name
Replicon	chromosome
Genomic location	1103271 - 1104734 (+ strand)

Cross-References

RefSeq	YP_004378788.1
GI	330501919
Entrez	10455787
INSDC	AEB57036.1
NCBI Locus Tag	MDS_1005
UniParc	UPI000206E746
UniProtKB Acc	F4DS15
UniProtKB ID	F4DS15_PSEMN
UniRef100	UniRef100_F4DS15
UniRef50	UniRef50_Q9K0Y9
UniRef90	UniRef90_A4XQR9

Product

Feature Type	CDS
Coding Frame	1
Product Name	UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
Synonyms
Evidence for Translation
Charge (pH 7)	-8.52
Kyte-Doolittle Hydrophobicity Value	0.026
Molecular Weight (kDa)	51684.4
Isoelectric Point (pI)	5.99

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 581 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004007 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: MDS_1005 Search term: UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase

Human Homologs

References