Pseudomonas mendocina NK-01, MDS_1057
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas mendocina NK-01
GCF_000204295.1|latest |
| Locus Tag |
MDS_1057
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 1162192 - 1163175 (+ strand) |
Cross-References
| RefSeq | YP_004378840.1 |
| GI | 330501971 |
| Entrez | 10455839 |
| NCBI Locus Tag | MDS_1057 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
ribosomal large subunit pseudouridine synthase D
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 4.55 |
| Kyte-Doolittle Hydrophobicity Value | -0.226 |
| Molecular Weight (kDa) | 36435.6 |
| Isoelectric Point (pI) | 8.29 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 590 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG004205 (535 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: MDS_1057
Search term: ribosomal large subunit pseudouridine synthase D
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
RNA pseudouridine synthase D4 [Source:HGNC Symbol;Acc:HGNC:25898]
E-value:
1.1e-12
Percent Identity:
28.5
|
References
No references are associated with this feature.