Pseudomonas mendocina NK-01, MDS_1436

Gene Feature Overview

Strain	Pseudomonas mendocina NK-01 GCF_000204295.1|latest
Locus Tag	MDS_1436
Name
Replicon	chromosome
Genomic location	1579782 - 1580471 (+ strand)

Cross-References

RefSeq	YP_004379219.1
GI	330502350
Entrez	10456218
INSDC	AEB57467.1
NCBI Locus Tag	MDS_1436
UniParc	UPI000206DA40
UniProtKB Acc	F4DX38
UniProtKB ID	F4DX38_PSEMN
UniRef100	UniRef100_F4DX38
UniRef50	UniRef50_F4NZD5
UniRef90	UniRef90_A4XS30

Product

Feature Type	CDS
Coding Frame	1
Product Name	uracil-DNA glycosylase
Synonyms
Evidence for Translation
Charge (pH 7)	3.34
Kyte-Doolittle Hydrophobicity Value	-0.397
Molecular Weight (kDa)	25.8
Isoelectric Point (pI)	8.27

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 352 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000724 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: MDS_1436 Search term: uracil-DNA glycosylase

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000242576 uracil DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:12572] E-value: 3.9e-60 Percent Identity: 52.3
Ensembl 110, assembly GRCh38.p14	ENSP00000337398 uracil DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:12572] E-value: 3.9e-60 Percent Identity: 52.3

References