Pseudomonas mendocina NK-01, MDS_1845

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_1845
Name
Replicon chromosome
Genomic location 2028606 - 2030081 (+ strand)

Cross-References

RefSeq YP_004379628.1
GI 330502759
Entrez 10456627
NCBI Locus Tag MDS_1845

Product

Feature Type CDS
Coding Frame 1
Product Name
sigma-54 dependent transcription regulator
Synonyms
Evidence for Translation
Charge (pH 7) -12.40
Kyte-Doolittle Hydrophobicity Value -0.366
Molecular Weight (kDa) 55513.8
Isoelectric Point (pI) 5.25

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
5EXX TRANSCRIPTION 11/24/15 AAA+ ATPase FleQ from Pseudomonas aeruginosa bound to c-di-GMP Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) 3.311 X-RAY DIFFRACTION 94.4
7EJW TRANSCRIPTION 04/02/21 Crystal structure of FleN in complex with FleQ AAA+ doamain Pseudomonas aeruginosa PAO1 1.98 X-RAY DIFFRACTION 95.3
6JDL TRANSCRIPTION 02/01/19 Central domain of FleQ H287A mutant in complex with ATPgS and Mg Pseudomonas aeruginosa 2.249 X-RAY DIFFRACTION 95.0
5EXP TRANSCRIPTION 11/24/15 AAA+ domain of FleQ from Pseudomonas aeruginosa Pseudomonas aeruginosa 1.8 X-RAY DIFFRACTION 95.7
6J7E TRANSCRIPTION 01/18/19 Crystal Structure of Central domain of FleQ in complex with ATPgS and Mg Pseudomonas aeruginosa 2.4 X-RAY DIFFRACTION 95.4
6JDI TRANSCRIPTION 02/01/19 Central domain of FleQ H287N mutant in complex with ATPgS and Mg Pseudomonas aeruginosa 1.95 X-RAY DIFFRACTION 95.0
5EXS TRANSCRIPTION 11/24/15 AAA+ ATPase FleQ from Pseudomonas aeruginosa bound to ATP-gamma-S Pseudomonas aeruginosa 2.5 X-RAY DIFFRACTION 95.7
5EXT TRANSCRIPTION 11/24/15 AAA+ domain of FleQ from Pseudomonas aeruginosa bound to ADP Pseudomonas aeruginosa 2.4 X-RAY DIFFRACTION 95.7

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 454 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001058 (532 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_1845

Human Homologs

References

No references are associated with this feature.