Pseudomonas mendocina NK-01, MDS_1941
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas mendocina NK-01
GCF_000204295.1|latest |
| Locus Tag |
MDS_1941
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 2128205 - 2129296 (+ strand) |
Cross-References
| RefSeq | YP_004379724.1 |
| GI | 330502855 |
| Entrez | 10456723 |
| NCBI Locus Tag | MDS_1941 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
chorismate synthase
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -3.47 |
| Kyte-Doolittle Hydrophobicity Value | -0.232 |
| Molecular Weight (kDa) | 39021.9 |
| Isoelectric Point (pI) | 6.44 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 5Z9A | LYASE | 02/02/18 | Crystal structure of chorismate synthase from Pseudomonas aeruginosa | Pseudomonas aeruginosa (strain LESB58) | 2.79 | X-RAY DIFFRACTION | 92.3 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 618 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG003709 (532 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: MDS_1941
Search term: chorismate synthase
|
Human Homologs
References
No references are associated with this feature.