Pseudomonas mendocina NK-01, MDS_1960

Gene Feature Overview

Strain	Pseudomonas mendocina NK-01 GCF_000204295.1|latest
Locus Tag	MDS_1960
Name
Replicon	chromosome
Genomic location	2149739 - 2151421 (+ strand)

Cross-References

RefSeq	YP_004379743.1
GI	330502874
Entrez	10456742
INSDC	AEB57991.1
NCBI Locus Tag	MDS_1960
UniParc	UPI0000E7BE34
UniProtKB Acc	F4DNP6
UniProtKB ID	F4DNP6_PSEMN
UniRef100	UniRef100_F4DNP6
UniRef50	UniRef50_P0AG69
UniRef90	UniRef90_Q9HZ71

Product

Feature Type	CDS
Coding Frame	1
Product Name	30S ribosomal protein S1
Synonyms
Evidence for Translation
Charge (pH 7)	-31.06
Kyte-Doolittle Hydrophobicity Value	-0.366
Molecular Weight (kDa)	62.1
Isoelectric Point (pI)	4.53

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 595 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002453 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: MDS_1960 Search term: 30S ribosomal protein S1

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000481743 zinc finger CCHC-type containing 17 [Source:HGNC Symbol;Acc:HGNC:30246] E-value: 1.9e-07 Percent Identity: 34.3

References