Pseudomonas mendocina NK-01, MDS_2124

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_2124
Name
Replicon chromosome
Genomic location 2333686 - 2335035 (- strand)

Cross-References

RefSeq YP_004379907.1
GI 330503038
Entrez 10456906
INSDC AEB58155.1
NCBI Locus Tag MDS_2124
UniParc UPI000206DE4C
UniProtKB Acc F4DQI2
UniProtKB ID F4DQI2_PSEMN
UniRef100 UniRef100_F4DQI2
UniRef50 UniRef50_Q390U4
UniRef90 UniRef90_F4DQI2

Product

Feature Type CDS
Coding Frame 1
Product Name
putative pyridoxal-dependent decarboxylase
Synonyms
Evidence for Translation
Charge (pH 7) -12.79
Kyte-Doolittle Hydrophobicity Value 0.016
Molecular Weight (kDa) 48496.2
Isoelectric Point (pI) 4.97

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 238 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG029791 (12 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_2124

Human Homologs

Ensembl 110, assembly GRCh38.p14
dopa decarboxylase [Source:HGNC Symbol;Acc:HGNC:2719]
E-value: 1.3e-22
Percent Identity: 24.2
Ensembl 110, assembly GRCh38.p14
dopa decarboxylase [Source:HGNC Symbol;Acc:HGNC:2719]
E-value: 1.3e-22
Percent Identity: 24.2

References

No references are associated with this feature.