Pseudomonas mendocina NK-01, MDS_2375

Gene Feature Overview

Strain	Pseudomonas mendocina NK-01 GCF_000204295.1|latest
Locus Tag	MDS_2375
Name
Replicon	chromosome
Genomic location	2599406 - 2599693 (- strand)

Cross-References

RefSeq	YP_004380158.1
GI	330503289
Entrez	10457157
INSDC	AEB58406.1
NCBI Locus Tag	MDS_2375
UniParc	UPI000206E478
UniProtKB Acc	F4DTX8
UniProtKB ID	F4DTX8_PSEMN
UniRef100	UniRef100_F4DTX8
UniRef50	UniRef50_C5BIJ3
UniRef90	UniRef90_A4XUY5

Product

Feature Type	CDS
Coding Frame	1
Product Name	cold-shock DNA-binding protein family protein
Synonyms
Evidence for Translation
Charge (pH 7)	0.46
Kyte-Doolittle Hydrophobicity Value	-0.194
Molecular Weight (kDa)	10202.5
Isoelectric Point (pI)	7.69

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 497 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002930 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: MDS_2375 Search term: cold-shock DNA-binding protein family protein

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000344401 lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207] E-value: 9.3e-08 Percent Identity: 35.7
Ensembl 110, assembly GRCh38.p14	ENSP00000489735 lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207] E-value: 9.3e-08 Percent Identity: 35.7
Ensembl 110, assembly GRCh38.p14	ENSP00000490468 lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207] E-value: 9.3e-08 Percent Identity: 35.7

References