Pseudomonas mendocina NK-01, MDS_2377

Gene Feature Overview

Strain	Pseudomonas mendocina NK-01 GCF_000204295.1|latest
Locus Tag	MDS_2377
Name
Replicon	chromosome
Genomic location	2600299 - 2602569 (+ strand)

Cross-References

RefSeq	YP_004380160.1
GI	330503291
Entrez	10457159
INSDC	AEB58408.1
NCBI Locus Tag	MDS_2377
UniParc	UPI000206E479
UniProtKB Acc	F4DTY0
UniProtKB ID	F4DTY0_PSEMN
UniRef100	UniRef100_F4DTY0
UniRef50	UniRef50_P0ABI1
UniRef90	UniRef90_Q4K9U8

Product

Feature Type	CDS
Coding Frame	1
Product Name	ATP-dependent Clp protease ATP-binding subunit ClpA
Synonyms
Evidence for Translation
Charge (pH 7)	-16.24
Kyte-Doolittle Hydrophobicity Value	-0.290
Molecular Weight (kDa)	83.8
Isoelectric Point (pI)	5.79

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 601 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002932 (531 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: MDS_2377 Search term: ATP-dependent Clp protease ATP-binding subunit ClpA

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000340385 caseinolytic mitochondrial matrix peptidase chaperone subunit B [Source:HGNC Symbol;Acc:HGNC:30664] E-value: 2.6e-36 Percent Identity: 31.5
Ensembl 110, assembly GRCh38.p14	ENSP00000441518 caseinolytic mitochondrial matrix peptidase chaperone subunit B [Source:HGNC Symbol;Acc:HGNC:30664] E-value: 2.6e-36 Percent Identity: 31.5
Ensembl 110, assembly GRCh38.p14	ENSP00000294053 caseinolytic mitochondrial matrix peptidase chaperone subunit B [Source:HGNC Symbol;Acc:HGNC:30664] E-value: 2.6e-36 Percent Identity: 31.5

References