Pseudomonas mendocina NK-01, MDS_3648

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_3648
Name
Replicon chromosome
Genomic location 4013251 - 4013832 (+ strand)

Cross-References

RefSeq YP_004381431.1
GI 330504562
Entrez 10458430
INSDC AEB59679.1
NCBI Locus Tag MDS_3648
UniParc UPI000206DBD7
UniProtKB Acc F4DTB3
UniProtKB ID F4DTB3_PSEMN
UniRef100 UniRef100_F4DTB3
UniRef50 UniRef50_P09223
UniRef90 UniRef90_P09223

Product

Feature Type CDS
Coding Frame 1
Product Name
superoxide dismutase
Synonyms
Evidence for Translation
Charge (pH 7) -7.42
Kyte-Doolittle Hydrophobicity Value -0.229
Molecular Weight (kDa) 21.3
Isoelectric Point (pI) 4.97

Subcellular localization

Individual Mappings
Localization Confidence PMID
Periplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
1DT0 OXIDOREDUCTASE 01/10/00 CLONING, SEQUENCE, AND CRYSTALLOGRAPHIC STRUCTURE OF RECOMBINANT IRON SUPEROXIDE DISMUTASE FROM PSEUDOMONAS OVALIS Pseudomonas putida 2.1 X-RAY DIFFRACTION 92.1

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 530 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003959 (531 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_3648

Human Homologs

Ensembl 110, assembly GRCh38.p14
superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]
E-value: 2.5e-44
Percent Identity: 46.5
Ensembl 110, assembly GRCh38.p14
superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]
E-value: 2.5e-44
Percent Identity: 46.5

References

No references are associated with this feature.