Pseudomonas mendocina NK-01, MDS_4007

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_4007
Name
Replicon chromosome
Genomic location 4414627 - 4415313 (+ strand)

Cross-References

RefSeq YP_004381790.1
GI 330504921
Entrez 10458789
INSDC AEB60038.1
NCBI Locus Tag MDS_4007
UniParc UPI000206E509
UniProtKB Acc F4DWT6
UniProtKB ID F4DWT6_PSEMN
UniRef100 UniRef100_F4DWT6
UniRef50 UniRef50_Q4KIR6
UniRef90 UniRef90_F4DWT6

Product

Feature Type CDS
Coding Frame 1
Product Name
short chain dehydrogenase
Synonyms
Evidence for Translation
Charge (pH 7) -2.87
Kyte-Doolittle Hydrophobicity Value 0.174
Molecular Weight (kDa) 23839.1
Isoelectric Point (pI) 5.99

Subcellular localization

Individual Mappings
Localization Confidence PMID
Extracellular Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 469 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG015122 (79 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_4007

Human Homologs

References

No references are associated with this feature.