Pseudomonas mendocina NK-01, MDS_4052
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas mendocina NK-01
GCF_000204295.1|latest |
| Locus Tag |
MDS_4052
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 4457765 - 4458610 (- strand) |
Cross-References
| RefSeq | YP_004381835.1 |
| GI | 330504966 |
| Entrez | 10458834 |
| NCBI Locus Tag | MDS_4052 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
short chain dehydrogenase
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 13.79 |
| Kyte-Doolittle Hydrophobicity Value | 0.260 |
| Molecular Weight (kDa) | 30443.2 |
| Isoelectric Point (pI) | 10.48 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 652 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG001721 (342 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: MDS_4052
Search term: short chain dehydrogenase
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
dehydrogenase/reductase 7 [Source:HGNC Symbol;Acc:HGNC:21524]
E-value:
5.5e-24
Percent Identity:
33.8
|
|
Ensembl
110, assembly
GRCh38.p14
|
dehydrogenase/reductase 7 [Source:HGNC Symbol;Acc:HGNC:21524]
E-value:
5.5e-24
Percent Identity:
33.8
|
|
Ensembl
110, assembly
GRCh38.p14
|
dehydrogenase/reductase 7 [Source:HGNC Symbol;Acc:HGNC:21524]
E-value:
5.5e-24
Percent Identity:
33.8
|
|
Ensembl
110, assembly
GRCh38.p14
|
dehydrogenase/reductase 7 [Source:HGNC Symbol;Acc:HGNC:21524]
E-value:
5.5e-24
Percent Identity:
33.8
|
References
No references are associated with this feature.