Pseudomonas mendocina NK-01, MDS_4172

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_4172
Name
Replicon chromosome
Genomic location 4581770 - 4582615 (- strand)

Cross-References

RefSeq YP_004381955.1
GI 330505086
Entrez 10458954
INSDC AEB60203.1
NCBI Locus Tag MDS_4172
UniParc UPI000206DBF0
UniProtKB Acc F4DYM5
UniProtKB ID F4DYM5_PSEMN
UniRef100 UniRef100_F4DYM5
UniRef50 UniRef50_Q52154
UniRef90 UniRef90_F4DYM5

Product

Feature Type CDS
Coding Frame 1
Product Name
transcriptional regulator PcaR
Synonyms
Evidence for Translation
Charge (pH 7) 4.00
Kyte-Doolittle Hydrophobicity Value -0.096
Molecular Weight (kDa) 31151.5
Isoelectric Point (pI) 8.22

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 331 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000153 (612 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_4172

Human Homologs

References

No references are associated with this feature.