Pseudomonas mendocina NK-01, MDS_4293

Gene Feature Overview

Strain	Pseudomonas mendocina NK-01 GCF_000204295.1|latest
Locus Tag	MDS_4293
Name
Replicon	chromosome
Genomic location	4692550 - 4693179 (- strand)

Cross-References

RefSeq	YP_004382076.1
GI	330505207
Entrez	10459075
INSDC	AEB60324.1
NCBI Locus Tag	MDS_4293
UniParc	UPI000206DED5
UniProtKB Acc	F4DLE2
UniProtKB ID	F4DLE2_PSEMN
UniRef100	UniRef100_F4DLE2
UniRef50	UniRef50_A2SLF7
UniRef90	UniRef90_Q889X1

Product

Feature Type	CDS
Coding Frame	1
Product Name	50S ribosomal protein L3
Synonyms
Evidence for Translation
Charge (pH 7)	8.90
Kyte-Doolittle Hydrophobicity Value	-0.291
Molecular Weight (kDa)	22.4
Isoelectric Point (pI)	10.42

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
7UNV	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.7	ELECTRON MICROSCOPY	90.0
7UNW	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.6	ELECTRON MICROSCOPY	90.0
7UNU	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.9	ELECTRON MICROSCOPY	90.0
7UNR	RIBOSOME	04/11/22	Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)	Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	2.9	ELECTRON MICROSCOPY	90.0

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 630 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001447 (534 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: MDS_4293 Search term: 50S ribosomal protein L3

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000398536 mitochondrial ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10379] E-value: 1.1e-24 Percent Identity: 33.2
Ensembl 110, assembly GRCh38.p14	ENSP00000264995 mitochondrial ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10379] E-value: 1.1e-24 Percent Identity: 33.2
Ensembl 110, assembly GRCh38.p14	ENSP00000424107 mitochondrial ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10379] E-value: 1.1e-24 Percent Identity: 33.2

References