Pseudomonas mendocina NK-01, MDS_4554

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_4554
Name
Replicon chromosome
Genomic location 4988652 - 4989323 (+ strand)

Cross-References

RefSeq YP_004382337.1
GI 330505468
Entrez 10459336
INSDC AEB60585.1
NCBI Locus Tag MDS_4554
UniParc UPI000206E52F
UniProtKB Acc F4DP58
UniProtKB ID F4DP58_PSEMN
UniRef100 UniRef100_F4DP58
UniRef50 UniRef50_Q13ZQ5
UniRef90 UniRef90_A4Y054

Product

Feature Type CDS
Coding Frame 1
Product Name
ribose-5-phosphate isomerase A
Synonyms
Evidence for Translation
Charge (pH 7) -5.83
Kyte-Doolittle Hydrophobicity Value 0.209
Molecular Weight (kDa) 23.5
Isoelectric Point (pI) 5.09

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
4X84 ISOMERASE 12/10/14 Crystal structure of Ribose-5-phosphate isomerase A from Pseudomonas aeruginosa Pseudomonas aeruginosa 1.25 X-RAY DIFFRACTION 90.4

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 374 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000322 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_4554

Human Homologs

Ensembl 110, assembly GRCh38.p14
ribose 5-phosphate isomerase A [Source:HGNC Symbol;Acc:HGNC:10297]
E-value: 5.9e-21
Percent Identity: 36.6

References

No references are associated with this feature.