Pseudomonas mendocina NK-01, MDS_4647

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas mendocina NK-01
GCF_000204295.1|latest
Locus Tag
MDS_4647
Name
Replicon chromosome
Genomic location 5095104 - 5096423 (- strand)

Cross-References

RefSeq YP_004382430.1
GI 330505561
Entrez 10459429
INSDC AEB60678.1
NCBI Locus Tag MDS_4647
UniParc UPI000206DA2D
UniProtKB Acc F4DQ35
UniProtKB ID F4DQ35_PSEMN
UniRef100 UniRef100_F4DQ35
UniRef50 UniRef50_W6R8G1
UniRef90 UniRef90_A4Y0G3

Product

Feature Type CDS
Coding Frame 1
Product Name
outer membrane porin
Synonyms
Evidence for Translation
Charge (pH 7) -10.27
Kyte-Doolittle Hydrophobicity Value -0.422
Molecular Weight (kDa) 47424.8
Isoelectric Point (pI) 4.72

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 21 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000288 (506 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: MDS_4647

Human Homologs

References

No references are associated with this feature.