Pseudomonas mendocina NK-01, MDS_4834

Gene Feature Overview

Strain	Pseudomonas mendocina NK-01 GCF_000204295.1|latest
Locus Tag	MDS_4834
Name
Replicon	chromosome
Genomic location	5294610 - 5295398 (+ strand)

Cross-References

RefSeq	YP_004382617.1
GI	330505748
Entrez	10459616
INSDC	AEB60865.1
NCBI Locus Tag	MDS_4834
UniParc	UPI000206DEFF
UniProtKB Acc	F4DSN5
UniProtKB ID	F4DSN5_PSEMN
UniRef100	UniRef100_F4DSN5
UniRef50	UniRef50_Q87UN0
UniRef90	UniRef90_A4Y0X8

Product

Feature Type	CDS
Coding Frame	1
Product Name	ABC transporter
Synonyms
Evidence for Translation
Charge (pH 7)	1.93
Kyte-Doolittle Hydrophobicity Value	0.019
Molecular Weight (kDa)	28.4
Isoelectric Point (pI)	7.30

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG005039 (538 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: MDS_4834 Search term: ABC transporter

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000413319 ATP binding cassette subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:70] E-value: 3.2e-18 Percent Identity: 28.9
Ensembl 110, assembly GRCh38.p14	ENSP00000313603 ATP binding cassette subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:70] E-value: 3.2e-18 Percent Identity: 28.9
Ensembl 110, assembly GRCh38.p14	ENSP00000403526 ATP binding cassette subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:70] E-value: 3.2e-18 Percent Identity: 28.9
Ensembl 110, assembly GRCh38.p14	ENSP00000412553 ATP binding cassette subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:70] E-value: 3.2e-18 Percent Identity: 28.9
Ensembl 110, assembly GRCh38.p14	ENSP00000365728 ATP binding cassette subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:70] E-value: 3.2e-18 Percent Identity: 28.9
Ensembl 110, assembly GRCh38.p14	ENSP00000389065 ATP binding cassette subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:70] E-value: 3.2e-18 Percent Identity: 28.9
Ensembl 110, assembly GRCh38.p14	ENSP00000445100 ATP binding cassette subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:70] E-value: 3.2e-18 Percent Identity: 28.9
Ensembl 110, assembly GRCh38.p14	ENSP00000389472 ATP binding cassette subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:70] E-value: 3.2e-18 Percent Identity: 28.9
Ensembl 110, assembly GRCh38.p14	ENSP00000391102 ATP binding cassette subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:70] E-value: 3.2e-18 Percent Identity: 28.9
Ensembl 110, assembly GRCh38.p14	ENSP00000373081 ATP binding cassette subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:70] E-value: 3.2e-18 Percent Identity: 28.9
Ensembl 110, assembly GRCh38.p14	ENSP00000373082 ATP binding cassette subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:70] E-value: 3.2e-18 Percent Identity: 28.9
Ensembl 110, assembly GRCh38.p14	ENSP00000414373 ATP binding cassette subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:70] E-value: 3.2e-18 Percent Identity: 28.9
Ensembl 110, assembly GRCh38.p14	ENSP00000404726 ATP binding cassette subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:70] E-value: 3.2e-18 Percent Identity: 28.9
Ensembl 110, assembly GRCh38.p14	ENSP00000393143 ATP binding cassette subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:70] E-value: 3.2e-18 Percent Identity: 28.9
Ensembl 110, assembly GRCh38.p14	ENSP00000411327 ATP binding cassette subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:70] E-value: 3.2e-18 Percent Identity: 28.9
Ensembl 110, assembly GRCh38.p14	ENSP00000405512 ATP binding cassette subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:70] E-value: 3.2e-18 Percent Identity: 28.9

References