Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a1234

Gene Feature Overview

Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421 GCF_000194805.1|latest
Locus Tag	PSEBR_a1234
Name
Replicon	chromosome
Genomic location	1527784 - 1528323 (+ strand)

Cross-References

RefSeq	YP_004352418.1
GI	330807956
Entrez	10470130
INSDC	AEA67414.1
NCBI Locus Tag	PSEBR_a1234
UniParc	UPI0002041CB7
UniProtKB Acc	F2KCX4
UniProtKB ID	F2KCX4_PSEBN
UniRef100	UniRef100_A0A0D0STI8
UniRef50	UniRef50_Q8PGV2
UniRef90	UniRef90_G8PXC4

Product

Feature Type	CDS
Coding Frame	1
Product Name	peptide deformylase
Synonyms
Evidence for Translation
Charge (pH 7)	-15.10
Kyte-Doolittle Hydrophobicity Value	-0.128
Molecular Weight (kDa)	20.1
Isoelectric Point (pI)	4.19

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 586 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001082 (483 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSEBR_a1234 Search term: peptide deformylase

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000288022 peptide deformylase, mitochondrial [Source:HGNC Symbol;Acc:HGNC:30012] E-value: 3.1e-20 Percent Identity: 34.2

References