Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a1847

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
GCF_000194805.1|latest
Locus Tag
PSEBR_a1847
Name
Replicon chromosome
Genomic location 2260664 - 2261563 (- strand)

Cross-References

RefSeq YP_004353069.1
GI 330808607
Entrez 10470786
INSDC AEA68065.1
NCBI Locus Tag PSEBR_a1847
UniParc UPI00020409B9
UniProtKB Acc F2KER9
UniProtKB ID F2KER9_PSEBN
UniRef100 UniRef100_A0A0D0SU27
UniRef50 UniRef50_H2N8L4
UniRef90 UniRef90_J2YDM5

Product

Feature Type CDS
Coding Frame 1
Product Name
hydroxymethylglutaryl-CoA lyase
Synonyms
Evidence for Translation
Charge (pH 7) -4.46
Kyte-Doolittle Hydrophobicity Value 0.161
Molecular Weight (kDa) 31.3
Isoelectric Point (pI) 5.16

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 332 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003428 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSEBR_a1847

Human Homologs

Ensembl 110, assembly GRCh38.p14
3-hydroxy-3-methylglutaryl-CoA lyase [Source:HGNC Symbol;Acc:HGNC:5005]
E-value: 3.6e-98
Percent Identity: 58.5

References

No references are associated with this feature.