Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a1872

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
GCF_000194805.1|latest
Locus Tag
PSEBR_a1872
Name
Replicon chromosome
Genomic location 2284599 - 2285549 (- strand)

Cross-References

RefSeq YP_004353094.1
GI 330808632
Entrez 10470811
INSDC AEA68090.1
NCBI Locus Tag PSEBR_a1872
UniParc UPI0002040AF2
UniProtKB Acc F2K9M8
UniProtKB ID F2K9M8_PSEBN
UniRef100 UniRef100_A0A0D0R2T4
UniRef50 UniRef50_Q87XQ4
UniRef90 UniRef90_A0A0D0R2T4

Product

Feature Type CDS
Coding Frame 1
Product Name
nucleoside-specific channel-forming protein
Synonyms
Evidence for Translation
Charge (pH 7) -6.91
Kyte-Doolittle Hydrophobicity Value -0.394
Molecular Weight (kDa) 35.2
Isoelectric Point (pI) 5.54

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 32 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG018574 (94 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSEBR_a1872

Human Homologs

References

No references are associated with this feature.