Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a4626

Gene Feature Overview

Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421 GCF_000194805.1|latest
Locus Tag	PSEBR_a4626
Name
Replicon	chromosome
Genomic location	5628508 - 5629971 (- strand)

Cross-References

RefSeq	YP_004356046.1
GI	330811584
Entrez	10473796
INSDC	AEA71042.1
NCBI Locus Tag	PSEBR_a4626
UniParc	UPI0002041185
UniProtKB Acc	F2K5A7
UniProtKB ID	F2K5A7_PSEBN
UniRef100	UniRef100_A0A0D0S5J5
UniRef50	UniRef50_Q87WY0
UniRef90	UniRef90_Q3K739

Product

Feature Type	CDS
Coding Frame	1
Product Name	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase
Synonyms
Evidence for Translation
Charge (pH 7)	-7.78
Kyte-Doolittle Hydrophobicity Value	-0.020
Molecular Weight (kDa)	52.1
Isoelectric Point (pI)	6.23

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 585 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004007 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSEBR_a4626 Search term: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase

Human Homologs

References