Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a5051

Gene Feature Overview

Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421 GCF_000194805.1|latest
Locus Tag	PSEBR_a5051
Name
Replicon	chromosome
Genomic location	6101675 - 6102604 (- strand)

Cross-References

RefSeq	YP_004356487.1
GI	330812025
Entrez	10474248
INSDC	AEA71483.1
NCBI Locus Tag	PSEBR_a5051
UniParc	UPI0002040BC0
UniProtKB Acc	F2KLU0
UniProtKB ID	F2KLU0_PSEBN
UniRef100	UniRef100_I4K0Y3
UniRef50	UniRef50_K9NPM9
UniRef90	UniRef90_K9NPM9

Product

Feature Type	CDS
Coding Frame	1
Product Name	NAD-dependent lipopolysaccharide biosynthesis-related epimerase/dehydratase
Synonyms
Evidence for Translation
Charge (pH 7)	-7.38
Kyte-Doolittle Hydrophobicity Value	-0.058
Molecular Weight (kDa)	33.3
Isoelectric Point (pI)	5.17

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 648 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001617 (520 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSEBR_a5051 Search term: NAD-dependent lipopolysaccharide biosynthesis-related epimerase/dehydratase

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000387019 UDP-glucuronate decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:17729] E-value: 2.7e-32 Percent Identity: 32.8
Ensembl 110, assembly GRCh38.p14	ENSP00000283148 UDP-glucuronate decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:17729] E-value: 2.7e-32 Percent Identity: 32.8

References