Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a5100

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
GCF_000194805.1|latest
Locus Tag
PSEBR_a5100
Name
Replicon chromosome
Genomic location 6163837 - 6165030 (- strand)

Cross-References

RefSeq YP_004356551.1
GI 330812089
Entrez 10474313
INSDC AEA71547.1
NCBI Locus Tag PSEBR_a5100
UniParc UPI0002040EAB
UniProtKB Acc F2KM04
UniProtKB ID F2KM04_PSEBN
UniRef100 UniRef100_A0A0D0R5A0
UniRef50 UniRef50_P17746
UniRef90 UniRef90_Q4K519

Product

Feature Type CDS
Coding Frame 1
Product Name
elongation factor TU
Synonyms
Evidence for Translation
Charge (pH 7) -12.75
Kyte-Doolittle Hydrophobicity Value -0.204
Molecular Weight (kDa) 43.6
Isoelectric Point (pI) 5.04

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
4IW3 METAL BINDING PROTEIN/TRANSLATION 01/23/13 Crystal structure of a Pseudomonas putida prolyl-4-hydroxylase (P4H) in complex with elongation factor Tu (EF-Tu) Pseudomonas putida 2.697 X-RAY DIFFRACTION 94.2
4J0Q TRANSLATION 01/31/13 Crystal structure of Pseudomonas putida elongation factor Tu (EF-Tu) Pseudomonas putida 2.294 X-RAY DIFFRACTION 94.2

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001434 (870 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSEBR_a5100

Human Homologs

Ensembl 110, assembly GRCh38.p14
Tu translation elongation factor, mitochondrial [Source:HGNC Symbol;Acc:HGNC:12420]
E-value: 2.5e-131
Percent Identity: 54.9

References

No references are associated with this feature.