Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a5662

Gene Feature Overview

Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421 GCF_000194805.1|latest
Locus Tag	PSEBR_a5662
Name
Replicon	chromosome
Genomic location	6838888 - 6840258 (- strand)

Cross-References

RefSeq	YP_004357210.1
GI	330812748
Entrez	10474981
INSDC	AEA72206.1
NCBI Locus Tag	PSEBR_a5662
UniParc	UPI0002041060
UniProtKB Acc	F2K7C9
UniProtKB ID	F2K7C9_PSEBN
UniRef100	UniRef100_A0A0D0S4F7
UniRef50	UniRef50_Q9CLQ1
UniRef90	UniRef90_Q4K396

Product

Feature Type	CDS
Coding Frame	1
Product Name	tRNA modification GTPase, TrmE
Synonyms
Evidence for Translation
Charge (pH 7)	-18.96
Kyte-Doolittle Hydrophobicity Value	-0.020
Molecular Weight (kDa)	48.9
Isoelectric Point (pI)	4.83

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 611 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG005098 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSEBR_a5662 Search term: tRNA modification GTPase, TrmE

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000313818 GTP binding protein 3, mitochondrial [Source:HGNC Symbol;Acc:HGNC:14880] E-value: 1.4e-56 Percent Identity: 36.1
Ensembl 110, assembly GRCh38.p14	ENSP00000354598 GTP binding protein 3, mitochondrial [Source:HGNC Symbol;Acc:HGNC:14880] E-value: 1.4e-56 Percent Identity: 36.1

References