Pseudomonas denitrificans ATCC 13867, H681_02415

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas denitrificans ATCC 13867
GCF_000349845.1|latest
Locus Tag
H681_02415
Name
Replicon chromosome
Genomic location 532802 - 534661 (- strand)

Cross-References

RefSeq YP_007655905.1
GI 472323659
Entrez 14994623
INSDC AGI22365.1
NCBI Locus Tag H681_02415
UniParc UPI0002C4ED23
UniProtKB Acc M4XAL8
UniProtKB ID M4XAL8_PSEDE
UniRef100 UniRef100_M4XAL8
UniRef50 UniRef50_P26480
UniRef90 UniRef90_P26480

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase sigma factor RpoD
Synonyms
Evidence for Translation
Charge (pH 7) -32.01
Kyte-Doolittle Hydrophobicity Value -0.631
Molecular Weight (kDa) 69692.8
Isoelectric Point (pI) 4.60

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
7XYA TRANSCRIPTION 06/01/22 The cryo-EM structure of an AlpA-loading complex Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT 3.3 ELECTRON MICROSCOPY 92.6

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 591 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000559 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: H681_02415

Human Homologs

References

No references are associated with this feature.