Pseudomonas denitrificans ATCC 13867, H681_02575

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas denitrificans ATCC 13867
GCF_000349845.1|latest
Locus Tag
H681_02575
Name
Replicon chromosome
Genomic location 570929 - 571603 (+ strand)

Cross-References

RefSeq YP_007655937.1
GI 472323691
EC Number 5.1.3.1
Entrez 14994655
INSDC AGI22397.1
NCBI Locus Tag H681_02575
UniParc UPI0002C4E909
UniProtKB Acc M4WUN5
UniProtKB ID M4WUN5_PSEDE
UniRef100 UniRef100_M4WUN5
UniRef50 UniRef50_P40117
UniRef90 UniRef90_Q88A31

Product

Feature Type CDS
Coding Frame 1
Product Name
ribulose-phosphate 3-epimerase
Synonyms
Evidence for Translation
Charge (pH 7) -6.62
Kyte-Doolittle Hydrophobicity Value 0.156
Molecular Weight (kDa) 24136.5
Isoelectric Point (pI) 5.06

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
7U5Y ISOMERASE 03/02/22 Crystal structure of ribulose-phosphate 3-epimerase from Pseudomonas aeruginosa Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) 2.55 X-RAY DIFFRACTION 94.6

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 594 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000590 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: H681_02575

Human Homologs

Ensembl 110, assembly GRCh38.p14
ribulose-5-phosphate-3-epimerase [Source:HGNC Symbol;Acc:HGNC:10293]
E-value: 1.8e-38
Percent Identity: 40.5

References

No references are associated with this feature.