Pseudomonas denitrificans ATCC 13867, H681_13680

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas denitrificans ATCC 13867
GCF_000349845.1|latest
Locus Tag
H681_13680
Name
Replicon chromosome
Genomic location 3088145 - 3088420 (+ strand)

Cross-References

RefSeq YP_007658146.1
GI 472325900
Entrez 14996864
INSDC AGI24606.1
NCBI Locus Tag H681_13680
UniParc UPI0002C4EA3C
UniProtKB Acc M4WZC3
UniProtKB ID M4WZC3_PSEDE
UniRef100 UniRef100_M4WZC3
UniRef50 UniRef50_P0A970
UniRef90 UniRef90_M4WZC3

Product

Feature Type CDS
Coding Frame 1
Product Name
cold-shock DNA-binding protein family protein
Synonyms
Evidence for Translation
Charge (pH 7) -0.54
Kyte-Doolittle Hydrophobicity Value -0.220
Molecular Weight (kDa) 9778.0
Isoelectric Point (pI) 6.52

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 499 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002930 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: H681_13680

Human Homologs

Ensembl 110, assembly GRCh38.p14
lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207]
E-value: 8.9e-08
Percent Identity: 36.2
Ensembl 110, assembly GRCh38.p14
lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207]
E-value: 8.9e-08
Percent Identity: 36.2
Ensembl 110, assembly GRCh38.p14
lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207]
E-value: 8.9e-08
Percent Identity: 36.2

References

No references are associated with this feature.