Pseudomonas denitrificans ATCC 13867, H681_21050 (truB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas denitrificans ATCC 13867
GCF_000349845.1|latest
Locus Tag
H681_21050
Name
truB
Replicon chromosome
Genomic location 4714047 - 4714961 (- strand)

Cross-References

RefSeq YP_007659617.1
GI 472327371
Entrez 14998335
INSDC AGI26077.1
NCBI Locus Tag H681_21050
UniParc UPI0002C4F6BE
UniProtKB Acc M4X4U9
UniProtKB ID M4X4U9_PSEDE
UniRef100 UniRef100_M4X4U9
UniRef50 UniRef50_Q8XZV4
UniRef90 UniRef90_M4X4U9

Product

Feature Type CDS
Coding Frame 1
Product Name
tRNA pseudouridine synthase B
Synonyms
Evidence for Translation
Charge (pH 7) -1.43
Kyte-Doolittle Hydrophobicity Value -0.225
Molecular Weight (kDa) 33447.0
Isoelectric Point (pI) 6.63

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 658 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004387 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: H681_21050
Search term: truB

Human Homologs

Ensembl 110, assembly GRCh38.p14
TruB pseudouridine synthase family member 1 [Source:HGNC Symbol;Acc:HGNC:16060]
E-value: 3.6e-37
Percent Identity: 40.5

References

No references are associated with this feature.