Pseudomonas denitrificans ATCC 13867, H681_22145 (hfq)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas denitrificans ATCC 13867
GCF_000349845.1|latest |
| Locus Tag |
H681_22145
|
| Name |
hfq
|
| Replicon | chromosome |
| Genomic location | 4948522 - 4948770 (- strand) |
Cross-References
| RefSeq | YP_007659836.1 |
| GI | 472327590 |
| Entrez | 14998554 |
| NCBI Locus Tag | H681_22145 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
RNA-binding protein Hfq
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 3.46 |
| Kyte-Doolittle Hydrophobicity Value | -0.215 |
| Molecular Weight (kDa) | 9131.5 |
| Isoelectric Point (pI) | 10.00 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 8BVH | RNA BINDING PROTEIN | 12/03/22 | Cryo-EM structure of the Hfq-Crc-amiE translation repression assembly. | Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT | 3.6 | ELECTRON MICROSCOPY | 100.0 |
| 3QUI | RNA BINDING PROTEIN | 02/24/11 | Crystal structure of Pseudomonas aeruginosa Hfq in complex with ADPNP | Pseudomonas aeruginosa | 1.933 | X-RAY DIFFRACTION | 100.0 |
| 8BVJ | RNA BINDING PROTEIN | 12/04/22 | Hfq-Crc-estA translation repression complex | Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT | 4.5 | ELECTRON MICROSCOPY | 100.0 |
| 4J5Y | RNA BINDING PROTEIN | 02/11/13 | Crystal structure of Hfq from Pseudomonas aeruginosa in complex with ATP | Pseudomonas aeruginosa | 2.0953 | X-RAY DIFFRACTION | 100.0 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 282 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG004559 (536 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: H681_22145
Search term: hfq
Search term: RNA-binding protein Hfq
|
Human Homologs
References
No references are associated with this feature.