Pseudomonas aeruginosa LESB58, PALES_16721

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas aeruginosa LESB58
GCF_000026645.1|latest
Locus Tag
PALES_16721
Name
Replicon chromosome
Genomic location 1799197 - 1799892 (- strand)

Cross-References

RefSeq YP_002439276
GI 218890412
Entrez 7176361

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Product Name Confidence: Class 4
Synonyms
Evidence for Translation
Charge (pH 7) 0.86
Kyte-Doolittle Hydrophobicity Value -0.321
Molecular Weight (kDa) 25.9
Isoelectric Point (pI) 7.27

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
7BU1 TRANSFERASE 04/03/20 Crystal structure of TrmO from Pseudomonas aeruginosa Pseudomonas aeruginosa 2.49 X-RAY DIFFRACTION 100.0
7BTZ TRANSFERASE 04/03/20 Crystal structure of TrmO Pseudomonas aeruginosa 2.4 X-RAY DIFFRACTION 100.0
7BTU TRANSFERASE 04/03/20 Crystal structure of TrmO from P. areuginosa Pseudomonas aeruginosa 1.91 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 243 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002240 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PALES_16721

Human Homologs

Ensembl 110, assembly GRCh38.p14
tRNA methyltransferase O [Source:HGNC Symbol;Acc:HGNC:30967]
E-value: 6.6e-31
Percent Identity: 46.9

References

No references are associated with this feature.