Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA5201
|
Name |
Synonym: tex Synonym: yhgF |
Replicon | chromosome |
Genomic location | 5853585 - 5855924 (+ strand) |
Transposon Mutants | 6 transposon mutants in PAO1 |
Transposon Mutants in orthologs | 1 transposon mutants in orthologs |
Comment | Tex binds dsRNA, ssRNA, dsDNA, and ssDNA, with a strong preference for ssRNA |
RefSeq | NP_253888.1 |
GI | 15600394 |
Affymetrix | PA5201_at |
Entrez | 878507 |
GenBank | AAG08586.1 |
INSDC | AAG08586.1 |
NCBI Locus Tag | PA5201 |
protein_id(GenBank) | gb|AAG08586.1|AE004933_2|gnl|PseudoCAP|PA5201 |
TIGR | NTL03PA05202 |
UniParc | UPI00000C5F4F |
UniProtKB Acc | Q9HTY8 |
UniProtKB ID | Q9HTY8_PSEAE |
UniRef100 | UniRef100_Q9HTY8 |
UniRef50 | UniRef50_Q45388 |
UniRef90 | UniRef90_Q9HTY8 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
transcriptional accessory protein Tex
|
Synonyms | |
Evidence for Translation |
Detected by iTRAQ (PMID:21863142).
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Detected by MALDI-TOF/TOF (PMID:19333994).
|
Charge (pH 7) | -5.13 |
Kyte-Doolittle Hydrophobicity Value | -0.285 |
Molecular Weight (kDa) | 85.0 |
Isoelectric Point (pI) | 6.29 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
3BZK | RNA BINDING PROTEIN | 01/18/08 | Crystal Structure of the Tex protein from Pseudomonas aeruginosa, crystal form 2 | Pseudomonas aeruginosa | 2.3 | X-RAY DIFFRACTION | 100.0 |
3BZC | RNA BINDING PROTEIN | 01/17/08 | Crystal Structure of the Tex protein from Pseudomonas aeruginosa, crystal form I | Pseudomonas aeruginosa | 2.27 | X-RAY DIFFRACTION | 100.0 |
2OCE | STRUCTURAL GENOMICS, UNKNOWN FUNCTION | 12/20/06 | Crystal structure of Tex family protein PA5201 from Pseudomonas aeruginosa | Pseudomonas aeruginosa PAO1 | 3.1 | X-RAY DIFFRACTION | 99.9 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 593 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG004785 (532 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA5201
Search term: transcriptional accessory protein Tex
|
Ensembl
110, assembly
GRCh38.p14
|
S1 RNA binding domain 1 [Source:HGNC Symbol;Acc:HGNC:25521]
E-value:
1.5e-98
Percent Identity:
33.6
|
A new gene locus of Bordetella pertussis defines a novel family of prokaryotic transcriptional accessory proteins.
Fuchs TM, Deppisch H, Scarlato V, Gross R
J Bacteriol 1996 Aug;178(15):4445-52
PubMed ID: 8755871
|
Analysis of the periplasmic proteome of Pseudomonas aeruginosa, a metabolically versatile opportunistic pathogen.
Imperi F, Ciccosanti F, Perdomo AB, Tiburzi F, Mancone C, Alonzi T, Ascenzi P, Piacentini M, Visca P, Fimia GM
Proteomics 2009 Apr;9(7):1901-15
PubMed ID: 19333994
|
Comparisons of Two Proteomic Analyses of Non-Mucoid and Mucoid Pseudomonas aeruginosa Clinical Isolates from a Cystic Fibrosis Patient.
Rao J, Damron FH, Basler M, Digiandomenico A, Sherman NE, Fox JW, Mekalanos JJ, Goldberg JB
Front Microbiol 2011;2:162
PubMed ID: 21863142
|
Crystal structure and RNA binding of the Tex protein from Pseudomonas aeruginosa.
Johnson SJ, Close D, Robinson H, Vallet-Gely I, Dove SL, Hill CP
J Mol Biol 2008 Apr 11;377(5):1460-73
PubMed ID: 18321528
|
Tex, a putative transcriptional accessory factor, is involved in pathogen fitness in Streptococcus pneumoniae.
He X, Thornton J, Carmicle-Davis S, McDaniel LS
Microb Pathog 2006 Dec;41(6):199-206
PubMed ID: 16997528
|